MISSED BY OTHERS, DETECTED BY US
IriSight® Case Study

Compound heterozygous SNVs in an sncRNA explain multiple fetal anomalies

Clinical presentation

A multigravida with noted reduction in fetal movement underwent an anatomy scan at 17 weeks gestation. The following fetal findings were noted:

  • Microcephaly, microtia, micrognathia
  • Hypospadias
  • Dysgyria & cerebellar hypoplasia

Previous genetic testing

On a prior pregnancy with similar phenotypes, testing was performed with negative results including:

  • Whole exome sequencing

IriSight® Testing

was ordered because of its ability to identify all major variant types in a single test.

Results and interpretation

Variantyx IriSight® testing identified compound heterozygous, maternally and paternally inherited SNVs within the RNU4ATAC gene.

Diagnosis: RNU4ATAC-related developmental disorders

IGV view of RNU4ATAC SNVs

Uniform data from WGS clearly shows both inherited SNVs in the non-coding RNU4ATAC gene.

The Variantyx Difference

Why were these variants detected by IriSight® testing, and not detected by exome testing of the prior pregnancy?

  • The variants fall within an sncRNA gene. Other tests focus predominantly, if not exclusively, on protein-coding genes.

  • While exomes have the potential to include sncRNA genes, a survey of commercial exome probe sets shows that only 2 in a representative sample targets RNU4ATAC.

    Variantyx genome analysis provides truly comprehensive mitochondrial and nuclear gene coverage, including analysis of sncRNAs. With a detection range from 1bp to whole chromosomal events, Variantyx genome analysis easily detects both SNVs.

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